Malta is one of the best places in the Mediterranean for boat tours and cruises. With its crystal-clear waters, historic sites, and stunning coastlines, exploring by boat offers a unique way to see the island’s highlights. Whether you want a private escape away from crowds or an adventurous sailing trip, the options are plentiful. We particularly love the Private Boat, Blue Lagoon, Crystal Lagoon Comino, Gozo Malta Ultimate Highlights for its flexibility and personalized experience, letting you avoid the crowds and enjoy the water in peace. For those seeking luxury, the Private Day Sailing Boat Charter offers a full day of tailored exploration with snacks and a barbecue onboard. Interested in a more laid-back afternoon? The Full-Day Catamaran Cruise with Lunch combines comfort with scenic sights. No matter your preference, Malta’s boat tours are a fantastic way to enjoy the sea and discover hidden corners of this fascinating island.
Below, we’ve compiled a list of the 15 best boat tours and cruises in Malta. From private charters to group adventures, each offers something special. Whether you’re after a quick swim or a full-day voyage, you’ll find options suited to your style and budget.
1. Private Boat, Blue Lagoon, Crystal Lagoon Comino, Gozo Malta Ultimate Highlights
Getting out on the water is one of the best ways to explore Malta, especially when you want to avoid the crowds. This private boat charter is tailored for your group and lets you visit the Blue Lagoon, Crystal Lagoon, and more, dropping anchor far from busy tour boats. With just your friends or family, you can swim, relax, and enjoy the stunning scenery at your own pace. The boat’s friendly skipper is known for his flexibility and personalized service, making this a perfect choice for a relaxed, custom experience.
Top reviews praise the captain’s friendliness and the ability to explore hidden spots almost alone, with one reviewer calling it “the highlight of our Malta trip.” The two-hour trip offers a chance to swim, feed fish, or just soak up the sun away from the crowds.
Bottom line: This is an ideal option if you want a private, flexible adventure on the water—perfect for families with young kids or groups seeking a peaceful escape.
2. Private Day Sailing Boat Charter
For around $637, the Private Day Sailing Boat Charter offers a luxurious, fully personalized experience. Departing from Kalkara Marina, this 9-hour trip can include stops at the Blue Lagoon, Crystal Lagoon, or secret sea caves. Snorkeling gear and paddleboards are included, and you can request drinks or a barbecue meal onboard.
This tour stands out because of its flexibility—your skipper will tailor the itinerary based on weather and your preferences. Guests love the chance to explore hidden caves and enjoy the peaceful lagoons without the usual crowds. Many mention the delicious barbecue and the attentive service as highlights.
Best suited for couples or small groups seeking a high-end, private experience with plenty of time for swimming and relaxation. The only drawback might be the price, but many feel it’s well worth the exclusivity and comfort.
Bottom line: If you’re after a private, all-inclusive day at sea with options for swimming and eating, this cruise offers luxurious value.
3. Best sailing adventure with Malta Sailing Experiences
Explore Malta’s waters on your own terms with the Best sailing adventure with Malta Sailing Experiences. You can choose between 4- and 8-hour packages, with sunset sails available. The private yacht departs from Malta’s coast, taking you to one of four bays, where snorkeling gear is provided so you can explore underwater.
Guests rave about the personalized service and the freedom to pick your stops. Many appreciate the option to sail, snorkel, or just lounge, making it a versatile choice. The price per group makes it a good deal for larger parties, and the private setting ensures a relaxed atmosphere.
Best suited for those who want a flexible sailing experience with the option for snorkeling or just enjoying the sunset. The 4- or 8-hour format means you can tailor your day easily.
Bottom line: A perfect pick for sailing enthusiasts wanting to explore Malta’s coast privately.
4. Full-Day Catamaran Cruise with Lunch in Island of Malta
If spacious comfort and a laid-back vibe appeal to you, this Full-Day Catamaran Cruise is hard to beat. Spanning 6.5 hours, it offers plenty of room for sunbathing on the deck or relaxing on bean bags. The cruise visits Comino’s Blue Lagoon with stops at Crystal Lagoon and Ramla Bay in Gozo for swimming.
Onboard, you’ll enjoy a lunch with drinks, featuring pork, chicken salads, and bread—all included in the price. The large craft has restrooms and shaded tables, making it suitable for families or groups seeking comfort. Many reviews highlight the delicious food, friendly crew, and relaxed atmosphere as key benefits.
Best suited for travelers who prefer a spacious boat with good amenities and a variety of swim stops. The moderate price per person offers great value for a full-day trip.
Bottom line: If you want a comfortable, social cruise with a good meal, this catamaran trip is a top choice.
5. Private Boat trip, Charter, Gozo, Comino, Malta, Blue lagoon T1
This 3-hour private boat trip offers a personalized cruise exploring Comino, the Blue Lagoon, and the Crystal Lagoon. The boat is yours, and the captain can customize the itinerary based on your preferences—whether that’s swimming, snorkeling, or relaxing onboard.
Guests love the flexibility and excellent communication with the crew—one called the skipper “wonderful” and “very accommodating.” The trip is best for those who want a shorter, intimate experience that hits all the major spots, with the convenience of a private boat.
Best suited for small groups or couples wanting a tailored experience. It’s a good value for the private nature but shorter duration compared to full-day options.
Bottom line: Ideal if you want customized, private exploration without the need for a full day at sea.
6. Malta: The Three Fortified Cities Tour including Boat Trip
This tour combines a land visit to Vittoriosa, Senglea, and Cospicua with a traditional boat ride around the Grand Harbour. It’s perfect for those interested in history and scenic views. The boat trip in a classic “frejgatina” provides a photo-worthy perspective of the colorful cityscapes and historic forts.
Guests frequently praise the informative guide and the breathtaking views. It’s a cost-effective option at around $44 per person, making it accessible for many travelers. The boat ride offers a relaxed way to see the harbor from a different angle, with many mentioning the vivid commentary.
Best suited for history buffs or first-time visitors wanting a rundown of Malta’s fortified cities.
Bottom line: A great value and educational experience combining land and water.
7. Comino, the BLUE LAGOON, Crystal Lagoon & Caves CRUISE
For those who prefer a day cruise with plenty of swimming and snorkeling, this 7-hour tour offers a fantastic the Blue Lagoon, Santa Maria Caves, and Comino’s cliffs. The boat departs at 10 am and features entry into caves and visits to the Elephants Head rock formation.
The crew is praised for their friendliness and safety, and the price point (around $35) makes it a popular pick. Many reviews highlight the beautiful scenery, with one calling it “an excellent trip with outstanding views.” The focus on snorkeling and sunbathing makes it perfect for active travelers wanting underwater adventures.
Best suited for budget travelers or families looking for a full-day on the water with multiple swim spots.
Bottom line: A cost-effective, fun-filled cruise with plenty of opportunities for swimming.
How to Choose Your Ideal Malta Boat Tour
When selecting a boat tour in Malta, consider your budget, time available, and what experiences excite you most. Private cruises like the Blue Lagoon, Crystal Lagoon & Caves Private Tour or the Full-Day Private Sailing Adventure suit travelers seeking full control and exclusivity. For a shorter, more economical trip, the Comino Day Cruise or Traditional Harbours Cruise are excellent options.
Think about your priorities: if snorkeling and swimming are key, look at trips with multiple stops like the Blue Lagoon Cruise. If you want a luxury experience with a barbecue, the Private Day Sailing Boat or Full-Day Catamaran are prime choices.
Booking early, especially in peak season, guarantees availability for your preferred date.
Final Thoughts
Malta offers a wide range of boat tours and cruises that suit almost every traveler. For those wanting a private and customized experience, options like the Private Boat Blue Lagoon & Gozo and the Full-Day Private Sailing Adventure are hard to beat. Budget travelers or groups on a tighter schedule will appreciate the cost-effective day cruises like the Comino Blue Lagoon Cruise or the Traditional Harbour Tour.
No matter which tour you choose, Malta’s seas and scenery are sure to leave a lasting impression. Booking early is recommended, especially for private and small-group tours, to ensure your spot on the water. Prepare to enjoy some of the most beautiful coastlines in the Mediterranean—Malta’s waters are calling.