Comino is a standout spot in Malta for boat lovers. Its crystal-clear waters, dramatic caves, and secluded beaches make it a perfect playground for boat tours. Whether you want a quick splash in the Blue Lagoon or a private cruise tailored to your interests, Comino offers options for all types of travelers. We especially love the Sunset Cruise to the Blue Lagoon, which combines spectacular views with relaxing swimming and snorkeling — and the full-service bar keeps the mood light. For those seeking exclusivity, the Private Boat Tours provide personalized experiences away from crowds, with options to explore caves and secret beaches. With so many options, you can enjoy Comino’s waters whether you’re after a quick trip or a full-day adventure.
In this list, you’ll find a variety of boat tours and cruises tailored for different interests and budgets. From group cruises that explore multiple lagoons and caves to luxurious private charters, each offers its own unique way to experience Malta’s stunning coastlines. We’ll cover sunset cruises, private charters, guided tours, and combination trips that include Gozitan highlights, so you can pick the best option for your Malta adventure.
1. Malta: Sunset Cruise to the Blue Lagoon
This 3.5-hour sunset cruise from Bugibba Jetty is a chance to enjoy the Blue Lagoon without the daytime crowds. The tour features a scenic ride past Malta’s northern beaches, caves, and rugged coastlines. Once at Comino, you’ll have about two hours at the Blue Lagoon to swim, snorkel, or simply relax on deck chairs with a drink from the full-service bar. The highlight is watching the sunset with stunning views over the water, accompanied by relaxing music and a fun, laid-back atmosphere. The 10-meter slide into the turquoise waters is a hit with kids and adults alike. This tour is perfect for travelers looking for a relaxed evening with good company and beautiful scenery.
Bottom Line: An excellent option for sunset lovers and those wanting a mix of sightseeing, swimming, and chill vibes.
2. From Malta: Gozo Quad Bike Tour + Comino Boat Tour and Lunch
For a full-day adventure, this combined quad biking tour in Gozo, boat trip to Comino, and a Gozitan lunch is hard to beat. Starting with guided quad biking, you’ll explore Sannap Cliffs and the Salt Pans, with stops for photos and scenic views. The afternoon includes a boat ride to the Blue Lagoon, where you can swim and snorkel. The tour is well-suited for active travelers who want variety — land, sea, and local food. The reviews point out the knowledgeable guides and the delicious traditional lunch. It’s priced at $136 per group, making it a good value for a day packed with different experiences.
Bottom Line: Best for active, curious travelers who want to see multiple highlights with a mix of land and sea.
3. Malta: Blue Lagoon, Crystal Lagoon & Sea Caves Boat Tour
This 3-4 hour small-group tour offers an up-close look at key spots in Comino, including the Blue Lagoon, Crystal Lagoon, and Sea Caves. You’ll explore these scenic sites aboard a boat that seats 24, making it ideal for a more personalized experience. Highlights include snorkeling in the clear waters, visiting Elephant Rock and Santa Maria Bay, and floating past dramatic sea caves. Stand-up paddleboarding and marine life viewing add extra fun. Reviewers love the friendly crew and the relaxed pace, with many noting it’s a perfect way to beat the crowds while enjoying the best of Comino’s natural beauty.
Bottom Line: Ideal for those who want a comprehensive yet intimate experience with plenty of swimming and cave exploration.
4. Malta: Comino, Blue lagoon, Crystal Lagoon Private Boat Tour
This 2-hour private boat tour offers a tailored experience exploring Comino and Blue Lagoon. Perfect for couples or small groups, you’ll have exclusive access to secluded spots and the flexibility to customize your route. The boat is equipped for snorkeling in crystal waters, and the captain can take you away from busy areas — so you get a more relaxed, personal adventure. Many reviews highlight the fun and informative guides, with one mentioning how the skipper made the experience memorable with good music and personalized service. The price is $180 for groups up to six.
Bottom Line: The best choice for privacy, flexibility, and a peaceful, customized experience.
5. Malta: Crystal/Blue Lagoon, Comino & Gozo Private Boat Trip
For a luxury private experience, this 3-hour boat tour explores both Comino and parts of Gozo. It’s perfect if you want a completely customizable trip with swimming, snorkeling, and cave visits in exclusive locations. The boat can be tailored to your interests, and the reviews mention knowledgeable captains and breathtaking scenery. At $283 per group, it’s a splurge, but those who value privacy and a bespoke experience find it worth every penny.
Bottom Line: Recommended for travelers seeking privacy, luxury, and a fully personalized day on the water.
6. From Malta/Gozo: Comino & Crystal Lagoon Private Boat Trip
This 1-hour private boat offers a quick but comprehensive journey through Comino’s highlights, including Blue Lagoon and hidden caves. With a focus on tranquility, it’s great for short trips or travelers with limited time. The reviews praise the friendly skipper and the ability to customize stops. At $22 per person, it provides a solid value for a scenic, private cruise.
Bottom Line: Perfect for a quick, private taste of Comino’s best spots.
7. Private Boat Trip: Explore Comino, Blue Lagoon & Santa Maria
This 3-hour private tour takes you to Comino’s most iconic locations, including Santa Maria Bay. The advantage here is the ability to skip the crowds and explore at your own pace. Reviewers appreciate the respectful captain and the flexibility to customize stops, making it ideal for those wanting a quiet, intimate experience. Price is $209 for groups up to six.
Bottom Line: Best for travelers who want private access to Comino’s secret spots and a flexible schedule.
8. Comino’s Best in a Flash: Caves, Coves & Beaches Boat Tour
For a quick, one-hour adventure, this private cruise offers a fast-paced trip around Comino’s caves, beaches, and coves. It’s perfect if you’re short on time but want to see a good variety of sights. The review simply states, “Great skipper, very nice excursions,” which suggests a straightforward, enjoyable experience.
Bottom Line: A quick, efficient way to see Comino’s top natural attractions.
9. Blue Lagoon, Crystal Lagoon & Comino Caves Private Boat Tour
This luxury private tour combines visits to the Blue Lagoon, Caves, and even a stop in Gozo. Using a powerful Yamaha V6 250 engine, it offers a fast, comfortable ride with lots of snorkeling and sightseeing. Reviewers love the ability to customize the trip and the boat’s comfort, with one noting the “unforgettable” experience. Duration is about 2 hours, making it a quick but memorable excursion.
Bottom Line: Geared toward travelers seeking a luxurious, personalized experience with plenty of swimming.
10. Malta: Private Boat Tour: Discover Comino’s Blue and Crystal Lagoon
This 1-hour private tour is ideal for quiet reflection and swimming in Comino’s tranquil waters. The flexible itinerary lets you avoid busy spots, and reviews mention the friendly captain and the relaxing atmosphere at just $22 per person.
Bottom Line: Perfect for those seeking a peaceful, private escape in Comino’s waters.
11. Comino Private Boat Tours: Blue/Crystal Lagoon, Malta & Gozo
Offering a 1-hour private experience, this tour focuses on customizing your journey to include caves, beaches, and snorkeling. The reviews highlight a friendly captain and a personalized approach, making it a good choice for small groups wanting to explore at their own pace.
Bottom Line: Great for small groups wanting a tailored, private day in Malta’s waters.
12. From Valletta: Full Day Private Charter on a Sailing Yacht
This 8-hour sailing yacht rental allows you to shape your own Maltese coast experience. Perfect for groups up to 12, it offers the freedom to visit bays and secluded spots only accessible by boat, with the comfort of a modern yacht. It’s a premium option for serious boat lovers.
Bottom Line: Best for those wanting a full-day, private sailing experience with complete control.
13. From Sliema: Private Comino and Gozo Boat Charter
This 7-hour private cruise from Sliema offers a customized exploration of Comino and Gozo, including the Blue Lagoon and Crystal Lagoon. The flexibility to create your own route appeals to travelers who want control over their itinerary and a relaxed, personalized day.
Bottom Line: Ideal for independent-minded travelers wanting full control and privacy.
14. Malta: Blue Lagoon, Comino & Gozo Private Boat Cruise & Trip
This 4-7 hour private cruise combines scenic beauty with affordability, accommodating groups up to 22. It features several drop-off points, and reviews note the professionalism and friendly service. It’s a suitable choice for larger groups or families who want a flexible, private day.
Bottom Line: Well-suited for groups seeking a private yet affordable Malta water experience.
15. MALTA Comino BlueLagoon 3 hours Private Boat trips
This 3-hour private trip packs in the Blue Lagoon and other key sites for a concise, personalized experience. It’s priced at $249 for groups up to seven, offering a good balance of time and exclusivity. Reviewers appreciate the friendly captain and the flexibility to customize the route.
Bottom Line: Perfect for travelers who want a quick, private taste of Comino’s highlights.
How to Choose the Best Boat Tour in Comino
When selecting your ideal boat experience, consider your budget, time constraints, and what interests you most — swimming, caves, privacy, or sightseeing. For those wanting a full-day adventure, the Full Day Private Charter on a Sailing Yacht offers unmatched flexibility, while the Sunset Cruise provides a memorable evening with stunning views. Budget-conscious travelers might prefer the shorter private trips or group tours, which often include the Blue Lagoon and caves. Booking early is advisable, especially in peak summer months, to secure your preferred time and experience.
Final Thoughts
Travelers to Comino have a rich array of boat tours to choose from, whether you prefer a quick hop, a private adventure, or a full-day exploration. For stunning scenery and a relaxed atmosphere, the Sunset Cruise delivers a memorable evening, while the Luxury Private Tours offer the ultimate in exclusivity and customization. Budget travelers and those craving flexibility will find several options that fit their needs without sacrificing quality. No matter what you choose, early booking is the best way to ensure you don’t miss out on Malta’s beautiful waters.
Whatever your style, Comino’s waters promise crystal-clear swims, stunning caves, and peaceful moments — so pick your tour and enjoy Malta from the water!