If you’re exploring Malta and looking for a way to see some of its most breathtaking spots without the hassle of driving or planning multiple excursions, this Three Bay Cruise might just be what you need. It promises a relaxed day of sailing along the northern coast, with stops at some of the archipelago’s standout locations—namely the Blue Lagoon, Crystal Lagoon, and alfa Rock Bay. We’ve gathered everything you need to know about this trip, based on reviews, itinerary details, and what you can expect, so you can decide if it fits your travel style.
What we really like about this cruise? First, the quality of the stops—each location offers a different vibe, from the iconic turquoise waters of Blue Lagoon to the hidden gem of alfa Rock. Second, the balance of time spent in each spot feels just right, allowing enough relaxation and adventure without feeling rushed. That said, a major consideration is the need for an official access pass if you want to step ashore at Blue Lagoon—something we’ll explain, so you’re prepared. This trip seems perfect for travelers who want a scenic day out that combines sightseeing, swimming, and a bit of downtime.
If you’re the type who loves beautiful coastlines, enjoys swimming in clear waters, and prefers a well-organized tour that hits multiple highlights, this cruise will likely suit you. It’s especially appealing if you’re not keen on long, exhausting excursions but still want a good taste of Malta’s top aquatic spots.
- Key Points
- The Itinerary in Detail
- Starting Point: Mellieha’s Marfa Jetty
- Stop 1: Blue Lagoon in Comino
- Stop 2: Crystal Lagoon on Comino’s West Side
- Stop 3: alfa Rock Bay in Gozo
- Scenic Return: Santa Maria Caves and Elephant Head Rock
- What’s Included and What’s Not
- The Experience: What It Feels Like
- Practical Tips for Booking and Planning
- Who Is This Cruise Best For?
- The Sum Up
- Three Bay Cruise Including Blue Lagoon from Mellieha
- FAQ
- More Boat Tours & Cruises in Malta
- More Tour Reviews in Malta
- More Malta experiences we've covered
Key Points

- Scenic sailing along Malta’s northern coastline offers spectacular views.
- Three distinct stops provide varied experiences — from relaxing in Blue Lagoon to exploring caves at Crystal Lagoon.
- Swim and snorkel opportunities allow you to enjoy the marine beauty of these protected lagoons.
- The tour duration of around 6 hours balances sightseeing and leisure.
- Booking in advance is advisable, with most guests reserving about 18 days ahead.
- A government-mandated pass is required if you want to set foot ashore at Blue Lagoon, which adds an extra step to plan for.
The Itinerary in Detail
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Starting Point: Mellieha’s Marfa Jetty
Your day begins in Mellieha, where you’ll meet the crew and get ready for a cruise that feels relaxed and well-paced. The boat departs in the morning, giving you ample time to enjoy the day’s highlights.
Stop 1: Blue Lagoon in Comino
This is the star of the trip and the main reason many travelers sign up. The Blue Lagoon is famous for its crystal-clear, turquoise waters and soft, white sandy bottom. It’s the kind of place where you want to bring your snorkel gear and camera, because the marine life beneath the surface can be pretty lively. Expect to stay here for about 1.5 to 2 hours—plenty of time to swim, sunbathe, or take a walk in the surrounding countryside.
From reviews, we know this stop can be quite crowded in summer, but the boat stays anchored nearby, so you have the option to relax on board if you prefer some quiet time. Keep in mind, to step ashore at Blue Lagoon, you’ll need an official access pass that can be obtained online in advance. Without this, you can still enjoy the views from the boat.
Stop 2: Crystal Lagoon on Comino’s West Side
Next, you head to the lesser-known but equally stunning Crystal Lagoon. Surrounded by impressive cliffs, this lagoon is perfect for snorkelling and exploring caves. It offers stunning 360-degree views and a sheltered environment—great if you’re looking for a more peaceful experience away from crowds. Here, you’ll stop for about an hour.
Based on reviews, divers and snorkellers will really enjoy this spot. The waters are mesmerizing, and if you’re into exploring marine caves, this is a highlight. The location feels exclusive and less commercialized than Blue Lagoon, making it a great contrast.
Stop 3: alfa Rock Bay in Gozo
From Comino, the cruise takes you over to Gozo, specifically to alfa Rock Bay. This hidden jewel is a tiny, deserted islet sitting on the edge of a pretty cove with a pebbly beach. It’s the perfect spot for a last swim, with an atmosphere that’s more secluded and pristine, especially compared to busier beaches. You’ll spend around an hour here.
Travelers have praised its pristine surroundings and the sense of being away from the crowds. It’s ideal for those who love natural, untouched scenery and want a peaceful spot for relaxation or a quick dip before heading back.
Scenic Return: Santa Maria Caves and Elephant Head Rock
On the way back to Mellieha, the boat passes some of Malta’s iconic coastal formations, including the Santa Maria Caves and the famous Elephant Head rock. These natural wonders add to the visual spectacle and give you plenty to admire from the boat.
What’s Included and What’s Not

The price for this cruise is around $46.26 per person, which is quite reasonable considering the three stops and the scenic sailing experience. Included in this price are all the swim stops, the scenic cruise, and the passage through notable caves and rock formations. Onboard facilities include toilets and showers, plus a small cash bar serving snacks and drinks.
However, note that you’ll need to purchase a government-issued pass if you want to set foot on the Blue Lagoon. You can buy this online, but it’s an extra step that requires planning ahead. Also, food isn’t included, but the onboard bar offers some light snacks if you’re feeling peckish.
What’s not covered? No hotel pickup or drop-off, so you’ll need to arrive at the meeting point in Mellieha. Also, large luggage or pets aren’t allowed, which is standard for most boat trips.
The Experience: What It Feels Like

From reviews, it seems this cruise offers a nice balance of relaxation and adventure. One traveler called it “a nice version of the boat tours in Malta,” appreciating the not-too-rushed pace and the pleasant crew. Others loved the longer stops for swimming and photos, describing the experience as both fun and calming.
Most people spend their time swimming, sunbathing, or exploring the caves. The boat itself is described as comfortable enough, with basic amenities, making it suitable for a laid-back day at sea. Some mention the snack bar is reasonably priced, so you can grab a cold drink or a quick snack without paying a premium.
A key consideration is sea sickness—if you’re prone to feeling seasick, this might not be the best choice, especially since the boat doesn’t seem to have any specific stabilization features, and weather can influence the ride.
Practical Tips for Booking and Planning

- Book early: With an average of 18 days in advance, it’s wise to reserve ahead, especially in high season.
- Get your Blue Lagoon pass early: Visit blcomino.com to secure your access if you plan to disembark ashore.
- Arrive on time: Boarding closes 20 minutes before departure, so arrive early to avoid missing out.
- Bring your own gear: Snorkels, masks, and fins can enhance your experience, as the marine life and caves are highlights.
- Prepare for weather: Cancellations are possible if conditions are poor, so keep an eye on the forecast.
- No large luggage: Pack light or leave heavy luggage behind, as large suitcases aren’t allowed onboard.
Who Is This Cruise Best For?

This tour is ideal for travelers who want a relaxed, scenic day on the water without the pressure of rushing through multiple stops. It’s suited for those who love swimming and snorkelling, and enjoy natural scenery. It’s also a good fit for groups or couples wanting a laid-back cruise experience with plenty of photo opportunities.
While families with children can enjoy the trip, keep in mind the seasickness factor and the need for an access pass at Blue Lagoon. It’s not recommended for travelers with mobility issues, but otherwise, it’s a straightforward, enjoyable outing for most.
The Sum Up

This Three Bay Cruise from Mellieha offers a well-rounded taste of Malta’s stunning coastlines. The combination of beautiful lagoons, secluded bays, and scenic cliffs makes it a great choice for anyone wanting to see Malta from the water without the hassle of multiple separate trips. The balanced timing at each stop allows for a mix of relaxation and exploration, which many travelers appreciate.
Price-wise, it delivers good value—covering three gorgeous locations, a scenic cruise, and easy onboard amenities. Just remember to plan ahead for the Blue Lagoon access pass if you want to step ashore, and arrive in good time to board comfortably.
Overall, if you enjoy being on the water, love swimming in clear waters, and want to see Malta’s coast from a relaxed vantage point, this cruise is worth considering. It’s a straightforward, enjoyable way to spend half a day exploring some of the archipelago’s most photogenic spots.
Three Bay Cruise Including Blue Lagoon from Mellieha
“This was a nice version of the boat tours in Malta. We were able to stop in 3 locations and spend enough time in each without feeling rushed or tha…”
FAQ

Do I need to book this cruise in advance?
Yes, most travelers book about 18 days ahead, and it’s recommended especially during high season to secure your spot.
Is there a time limit for each stop?
Yes, you can expect around 1 to 2 hours at each stop—enough time to swim, relax, and take photos, but not so long that the day feels dragging.
Do I need to bring my own snorkel gear?
While not explicitly mentioned, bringing your own snorkel equipment can enhance your experience, especially at the caves and crystal waters.
Can I disembark at Blue Lagoon?
You can only step ashore with a government-issued access pass, which must be obtained online beforehand. Without it, you’ll enjoy the view from the boat.
What amenities are available onboard?
The boat has toilets, showers, and a small cash bar serving snacks and drinks.
Is this tour suitable for children?
Generally yes, but keep in mind the boat ride might be rough if the weather isn’t calm, and children should be supervised during swimming stops.
What if the weather is bad?
The provider reserves the right to cancel or reschedule for safety. If canceled, you can choose a different date or get a full refund.
Hope this helps you decide if this cruise fits your Malta plans. It offers a good mix of stunning scenery, relaxing swimming, and a chance to see some hidden gems—all in a laid-back, friendly atmosphere.
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